Journal Papers
dnm, af, 1c1s, evs, te, tlfc, dg, pc, 3di, d2f
33. Kunitake, K., Mizuno, T., Hattori, K., Oneyama, C., Kamiya, M., Ota, S., Urano, Y., and Kojima, R. (2023). Barcoding of small extracellular vesicles with CRISPR-gRNA enables comprehensive, subpopulation-specific analysis of their biogenesis/release regulators. bioRxiv, 2023.09.28.559700. 10.1101/2023.09.28.559700.
32. Suzuki, K., Watanabe, N., Torii, S., Arakawa, S., Ochi, K., Tsuchiya, S., Yamada, K., Kawamura, Y., Ota, S., Komatsu, N., et al. (2023). Artificial Intelligence Enables the Label-Free Identification of Chronic Myeloid Leukemia Cells with Mitochondrial Morphological Alterations. bioRxiv, 2023.07.26.550632. 10.1101/2023.07.26.550632.
31. Teranishi K, Wagatsuma K, Toda K, Nomaru H, Yanagihashi Y, Ochiai H, Akai S, Onda Y, Nakagawa K, Sugimoto K, Takahashi S, Yamaguchi H, Ota S*, Cell Manufacturing Label-free ghost cytometry for manufacturing of cell therapy products. bioRxiv. . under review.
30. M Tamamitsu, K Toda, M Fukushima, V Ramaiah Badarla, HShimada, S Ota, K Konishi, T Ideguchi, Mid-infrared wide-field nanoscopy Nature Photonics (2024)
29. Kawamura, Y., Nakanishi, K., Murata, Y., Teranishi, K., Miyazaki, R., Toda, K., Imai, T., Kajiwara, Y., Nakagawa, K., Matsuo, H., et al. Label-free cell detection of acute leukemia using ghost cytometry. Cytometry A (2023), accepted.
28. Tsubouchi A†, An Y†, Kawamura Y†, Yanagihashi Y, Murata Y, Teranishi K, Ishiguro S, Aburatani H, Yachie N, Ota S*,(† equal contributions), Pooled CRISPR screening of high-content cellular phenotypes by ghost cytometry, Cell Rep Methods, (2024).
27. Iwama Y, Nomaru H, Masuda T, Kawamura Y, Matsumura M, Murata Y, Teranishi K, Nishida K, Ota S, Mandai M, Takahashi M, Label-free enrichment of human pluripotent stem cell-derived early retinal progenitor cells for cell-based regenerative therapies, Stem Cell Reports, (2024), DOI:https://doi.org/10.1016/j.stemcr.2023.12.001.
26. Kawamura, Y., Nakanishi, K., Murata, Y., Teranishi, K., Miyazaki, R., Toda, K., Imai, T., Kajiwara, Y., Nakagawa, K., Matsuo, H. Adachi S, Ota S*, Hiramatsu H*, Label-free cell detection of acute leukemia using ghost cytometry. Cytometry A. (2023), DOI: https://doi.org/10.1002/cyto.a.24821
25. Yamashita M, Tamamitsu M, Kirisako H, Goda Y, Chen X, Hattori K*, Ota S, High-throughput 3D imaging flow cytometry of adherent 3D cell cultures, Small Methods, (2023).
24. Kawasaki F†, Mimori T†, Mori Y, Aburatani H, Yachie N, Sato I*, Ota S*,(† equal contributions), Computational microdroplet design for optical cell barcoding, Adv Opt Mater, (2023).
23. Kawasaki F, Mimori T, Mori Y, Sato I, Ota S*, Identification of In-droplet Multicellular Communities by Light-induced Combinatorial DNA Barcoding, Chem. Eur. J (2023). 10.1002/chem.202301133
22. Tsuyama Y, Xu B, Hattori K, Baek S, Yoshioka Y, Kojima R, Cho Y, Laurell T, Kim S, Ota S*, Lee SW*, A 50 µm acoustic resonator microchannel enables focusing 100 nm polystyrene beads and sub-micron bioparticles, Sensors and Actuators B: Chemical, (2023).
21. Hattori K, Goda Y, Yamashita M, Yoshioka Y, Kojima R, Ota S*, Droplet array-based platform for parallel optical analysis of dynamic extracellular vesicle secretion from single cells, Anal. Chem. 94, 32, 11209–11215, (2022). Cover Article.
20. Ugawa M, Ota S*, High-speed 3D-imaging flow cytometry with optofluidic spatial transformation, Biomedical Optics Express 6:3647-3656, (2022).
19. Ugawa M, Ota S*, High-throughput parallel optofluidic 3D-imaging flow cytometry, Small Science, (2022). Cover Article.
18. Ugawa M, Lee H, Lee M, Kim S, Jeong OkChan, Sohn D, Laurell T, Ota S*, Lee SW*, Reduced acoustic resonator dimensions improve focusing efficiency of bacteria and submicron particles, Analyst 147, 274-281, (2022).
17. Ugawa, M, Kawamura Y, Toda K, Teranishi K, Morita H, Adachi H,Tamoto, R, Nomaru H, Nakagawa K, Sugimoto K, Borisova E, An Y, Konishi Y, Tabata S, Morishita S, Imai M, Takaku T, Araki M, Komatsu N, Hayashi Y, Sato I, Horisaki, R, Noji H, Ota S*, In silico–labeled ghost cytometry, eLife 10:e67660 (2021).
16. Ota S., Sato, I. and Horisaki, R., Implementing Machine Learning Methods for Imaging Flow Cytometry. Microscopy. 69 (2), 61-68 (2020).
15. Adachi, H., Kawamura, Y., Nakagawa, K., Horisaki, R., Sato, I., Yamaguchi, S., Fujiu, K., Waki, K., Noji, H., Ota, S.*, Use of Ghost Cytometry to Differentiate Cells with Similar Gross Morphologic Characteristics, Cytometry Part A 97 (4), 415-422 (2019).
14. Ota S*†, Horisaki R†, Itahashi Y†, Ugawa M†, Sato I, Hashimoto K, Kamesawa R, Setoyama K, Yamaguchi S, Fujiu K, Waki K, Noji H († equal contributions) Response to comment on "ghost cytometry", Science (2019).
13. Ota S.*†, Horisaki R.†, Itahashi Y.†, Ugawa M.†, Sato I., Hashimoto K., Kamesawa R., Setoyama K., Yamaguchi S., Fujiu K., Waki K., Noji H. († equal contributions), Ghost Cytometry, Science, 360, 1246-1251, (2018).
12. M. Ugawa, C. Lei, T. Nozawa, T. Ideguchi, D. Di Carlo, S. Ota, Y. Ozeki, and K. Goda, “High-throughput optofluidic particle profiling with morphological and chemical specificity,” Optics Letters, 15, 4803-6 (2015).
11. Kolchin P., Pholchai, P., Mikkelsen, MH., Oh, J., Ota, S., Islam, MS., Yin, X., Zhang, X., High Purcell Factor Due to Coupling of a Single Emitter to a Dielectric Slot Waveguide, Nano Letters, 15 (1), (2015)
10. Li, T.+, Ota, S. +, Kim, J., Wong, ZJ, Wang, Y., Zhang, X., (+ Eq. contributions) , Axial Plane Optical Microscopy, Sci. Rep. , 4, 7253, (2014).
9. Ma, R.+, Ota, S. +, Li, Y., Yang, S., Zhang, X., (+ Eq. contributions), Explosive Detection in a Lasing Plasmon Nanocavity, Nature Nanotechnol. 9, 600-604, (2014). Highlighted in Phys.org, Daily Digest, Photonics.com, & etc...
8. Ota, S. Li, T., Li, Y., Ye, Z., Labno, A., Yin, X., Alam, MR., Zhang, X., Brownian Motion of Tethered Nanowire, Phys. Rev. E, 89 (5), 053010 (2014). Highlighted in Nanotechweb.org & etc...
7. Huidobro P.A.+, Ota, S. +, Yang, X., Yin, X., Garcia-Vidal, FJ., Zhang, X.,(+ Eq.), Plasmonic Brownian Ratchet, Phys. Rev. B, 88, 201401(R) (2013).
6. Ota, S. Wang, S., et al. Intracellular Delivery of Top-down Fabricated Tunable Nano-plasmonic Resonators. Nanoscale 5, 10179-10182 (2013).
5. Ota, S., Wang, S., et al. Lipid Bilayer-Integrated Optoelectronic Tweezers for Nanoparticle Manipulations. Nano Lett. 13, 2766–2770 (2013).
4. Ota, S., Kitagawa, H., and Takeuchi, S., Generation of Femtoliter Reactor Arrays within a Microfluidic Channel for Biochemical Analysis, Anal. Chem., 24, 1340 (2012).
3. Wang, S. Ota, et al. Subcellular Resolution Mapping of Endogenous Cytokine Secretion by Nano-Plasmonic-Resonator Sensor Array. Nano Lett. 11, 3431–3434 (2011). Highlighted in Nature Photonics.
2. Ota, S., Suzuki, H. & Takeuchi, S. Microfluidic Lipid Membrane Formation on Microchamber Arrays. Lab Chip 11, 2485 (2011).
1. Ota, S., Yoshizawa, S. & Takeuchi, S. Microfluidic Formation of Monodisperse, Cell-Sized, and Unilamellar Vesicles. Angew. Chem. Int. Ed. 48, 6533–6537 (2009). Highlighted in Nature Chemistry & etc...
Conferences
5. Ota, S. et al. MRS, (2013).
4. Ota, S. et al. APS, (2013).
3. Ota, S. et al. Biophys. Soc., (2013).
2. Ota, S. et al. MicroTAS, (2009). Widmer Research Award.
1. Ota, S. et al. MEMS, (2008)